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If it were timing or ignition parts I would presume it to happen on every stroke.
Have you replaced or swapped the plugs left/right? How old are your spark secondary wires? Are you leaking a spark occasionally? Try swapping the wires. Also try swapping the coils left/right to see if you can move the fault to the other cylinder. That might narrow the diagnostics.
Sounds a bit like a momentary lean running sneeze. Note exactly where the recessed screw is positioned in the left carb. Back it out half a turn and see if it alters the condition. You can always return to the original screw position.
Actually, I was going to do my first attempt at synching the carbs very soon,
DOH! I foolishly presumed you had already balanced and synchronized the carbs.
since I've rebuilt the heads,
Between you and Chuck I am now ashamed that I brought this subject up before "doing" the carbs. Case closed, I will refrain from further embarrassing myself now.