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Pretty odd I'd say, like maybe not the trans at all but maybe swingarm exposed drive. If you can turn all with alt bolt but not with rear wheel. I'm trying to think out the box especially if trans was not messed with.
Yup , this is rather embarrassing but I'll put it out there I case it helps anyone else in the future. There was nothing wrong , I dont seem to have the strength to turn it over in first. Also despite being able to see the starter ring disengage slightly from the gearbox when the clutch was pulled it just wasnt enough . More adjustment on the cable and putting the bike in 5th and the clutch seems to work fine. Time to put the bike back together.