I'm chasing a popping on overrun too -- up to 2800 rpm, when I roll off or am riding 'easy' in a 25mph zone, it's embarrassing and damaging to the engine. I've even shortened the life of my ATF drivepiece (that nasty hex shaft they cursed Convert pumps with) by those tiny, intermittent chugs. After triple-checking the engine baseline (valves, etc), tps baseline, the tb synch, re-positioning the ambient air temp sensor, and "exhaustively" checking for leaks at the pipes, the popping continues. Having eliminated all else, it must be map-related. I'm working with Beetle on converting a 15M ecu and attendant subsystem from 1100 Hydro specs to fuel a1200 Breva. It's a little out-of-the-box (which is why it's fun!), so we expect a few false runs at it before getting it right.
One thing that Beetle and I agree on is that you can't really develop a good map if the other pertinent systems aren't completely Skookum. Ok. Beetle doesn't know what Skookum means, but he knows what it is. So I've suspended his effort until I KNOW the rest of the specs are correct. Otherwise I feel that I'm wasting his time and talents. I wonder how many folks who aren't getting the results they expect from his maps are trying to use them more like Power Commander band-aids to mask unrelated problems.
My point is, that even if there is no significant effect from any one little detail being out-of-spec, the accumulated effect of a bunch of things being a tiny bit off can have a big impact on the overall performance and drivability of the machine. I don't think time checking and tweaking the little things is wasted.
$0.02