The rule of thumb is - the problem is the last thing touched.
It has to be something in the "strip down and reassembly" since it was fine before that.
What was done to the engine in that process? I would have balanced the carbs to get it running smooth. Or was it some other 'out-of-balance'?
Since you can get it running past 4K with light throttle, I suspect it's something to do with the carbs. It's getting a weak mixture, slow flow to the float bowls, accelerator pumps. I don't suspect the pumps because it's highly unlikely both suffered the same time.