The ECU has a tiny drain, I guess to keep the memory but not enough to spark.
GPS docking stations will draw a little even without the unit plugged in.
Do you have an after market regulator? They can draw a few milliamps.
You can leave all the negatives in place, they won't do any harm
Heres what a 98 EV has

Note a red wire to each ECU fuse, another to the ignition switch.
If you have an odd coloured wire (not Red) on battery positive treat it with suspicion (the main starter cable is black)
As well look down on the solenoid where the main cable attaches, sometimes they use that spot to tap extra wires on.
Have you tried measuring the current with multimeter? if you don't have one put a tiny 12 Volt lamp in series, a 12V LED is perfect because it will light up with about 5 milliamps.
You have to be careful measuring milliamps with a multimeter, 9 x out of 10 the fuse is blown and they read zero which is misleading.