I know what you mean about the wires. what isn't filthy is discolored.
I've dreaded doing this, but so far it's not too bad. I'm removing and replacing little by little.
I started with the headlight and only did the headlight. Put the battery back in and it turned over, and the lights worked. Did the same with the ignition switch.
Removed the battery and did the alternator next. low hanging fruit.
Next is the main harness. I prewired the new fuse box matching the connectors on the old. Right now there are two harnesses partially attached. the new fuse box is in place and wired, with the rear lights and turn signal wires in place.
This would suck if it wasn't for Greg Benders harness, and/or if I was starting on a bike with badly butchered wiring.