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It being on with the key turned off is a clue that maybe your ignition switch internals needs a look see.
4. I could not read any ( zero ) voltage at the fuse box at all .
Only the top 2 should be alive with the key offhttp://www.thisoldtractor.com/guzzi007/schematics/1978_LeMans_II.gifFrom your findings 1, 2a, 2b I'm starting to think you have the wire for the charge light on the wrong terminal of the voltage regulator, it should be on the 61 terminalI think you may have it on a terminal that is Hot with the key Off Check the 61 terminal on the rectifier, it should be dead with the key off.If you find 61 is alive pull the wire of D+ and report back.