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I would slightly cut all the way around with a hacksaw then run the pipe cutter in that groove to guide it.
if someone put it together you have to be able to take it apart. But then again that is armchair thought from a long ways away!
Dremmel.
I might have missed it but you could put the stem in the vice cross ways, cut a bit at a time rotating, the blade will stop on the jaw top.
I would cut the wire(s) and put new connectors on, or solder the wires back together, afterwards. Why fool around?
After you get it cut to length you'll have the sharp edges that'll cut the insulation, after you de burr it the best you can may I suggest glueing in a grommit with Goop. It sets fast and is tough stuff. You could just use that without a grommit.
That done, slide and roll your stud below the tool.
what about just fit a spacer on the thread so it does not go through too far.
I still dont have a good picture of what you're trying to do, but will suggest an approach.devise a way to clamp a Dremel cuttoff tool over the flat surface so that its cutting edge is exactly the diameter of the stud, less one wall thickness, above the flat. That done, slide and roll your stud below the tool. You will not be able to to cut the wire that way, i believe. You will have to adjust the tool position as the carbide wears away.
Is this gonna take a long time?